C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubby candidate gene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119474 Tub-002 ENSMUSG00000031028 10090 + 7:109017542-109030482 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryENSMUST00000119474
Transcript ID Ovary
ENSMUST00000119474 0.779±0.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096V CIL_00096V_0002 VISTA 7:108496607-109099113
CIL_0009BA CIL_0009BA_0002 VISTA 7:108813133-109417303
CIL_0008M3 CIL_0008M3_0002 VISTA 7:108861322-109462713
CIL_0009BB CIL_0009BB_0002 VISTA 7:108902812-109503341
CIL_00046S CIL_00046S_0002 CGP 7:108934417-109034460
CIL_0007IX CIL_0007IX_0003 CGP 7:109010825-109083331

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005576 IEA extracellular region
GO:0005634 IEA nucleus
GO:0005829 IMP cytosol
GO:0005886 IEA plasma membrane
GO:0006909 IEA phagocytosis
GO:0007602 IMP phototransduction
GO:0007605 IMP sensory perception of sound
GO:0008020 IMP G-protein coupled photoreceptor activity
GO:0009584 IMP detection of visible light
GO:0044259 IMP multicellular organismal macromolecule metabolic process
GO:0050766 ISS positive regulation of phagocytosis
GO:0060041 IMP retina development in camera-type eye
GO:0097500 IMP receptor localization to nonmotile primary cilium

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000089574 TUB-201 protein_coding Danio_rerio 2e-33 148
ENST00000299506 TUB-003 protein_coding Homo_sapiens 0 2093
ENST00000305253 TUB-002 protein_coding Homo_sapiens 0 2091
ENST00000534099 TUB-001 protein_coding Homo_sapiens 0 2093

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