C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane 6 superfamily member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119543 Tm6sf1-005 ENSMUSG00000038623 10090 + 7:81862687-81883419 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000119543
Transcript ID Adipose Bladder Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000119543 13.796±2.00 8.272±0.00 14.675±8.30 5.552±0.78 4.660±1.50 3.861±2.88 14.875±2.96 3.028±0.59 18.485±0.00 2.952±1.31 3.686±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001L6 CIL_0001L6_0002 CGP 7:81859001-81934473

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000258909 TM6SF1-004 nonsense_mediated_decay Homo_sapiens 0 394
ENST00000299633 HDGFRP3-001 protein_coding Homo_sapiens 0 263
ENST00000322019 TM6SF1-001 protein_coding Homo_sapiens 0 1290
ENST00000379384 TM6SF1-003 nonsense_mediated_decay Homo_sapiens 0 896
ENST00000379390 TM6SF1-006 protein_coding Homo_sapiens 0 475
ENST00000564988 TM6SF1-008 processed_transcript Homo_sapiens 0 398
ENST00000565774 TM6SF1-005 protein_coding Homo_sapiens 0 776
ENST00000565982 TM6SF1-009 protein_coding Homo_sapiens 0 861

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