C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 9703
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119573 Gm9703-001 ENSMUSG00000082741 10090 + 17:27530067-27530409 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainLiverLungMuscleOvaryPlacentaTestisENSMUST00000119573
Transcript ID Adipose Bladder Brain Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000119573 0.458±0.00 0.045±0.00 0.140±0.00 0.085±0.00 0.250±0.00 0.158±0.00 0.191±0.05 0.117±0.11 0.600±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000251 CIL_000251_0002 CGP 17:27422387-27563674

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000287038 RPL30-001 protein_coding Homo_sapiens 0 481
ENST00000396070 RPL30-009 protein_coding Homo_sapiens 0 231
ENST00000414021 RPL30P2-001 processed_pseudogene Homo_sapiens 0 244
ENST00000418873 RPL30P13-001 processed_pseudogene Homo_sapiens 0 318
ENST00000429309 RPL30P4-001 processed_pseudogene Homo_sapiens 0 394
ENST00000480085 RP1-249H1.3-001 processed_pseudogene Homo_sapiens 0 342
ENST00000482744 RPL30P14-001 processed_pseudogene Homo_sapiens 0 412
ENST00000517489 RPL30-004 retained_intron Homo_sapiens 0 388
ENST00000518164 RPL30-002 processed_transcript Homo_sapiens 0 231
ENST00000518850 RPL30-010 nonsense_mediated_decay Homo_sapiens 0 252
ENST00000520998 RPL30-006 retained_intron Homo_sapiens 0 237
ENST00000521112 RPL30-005 retained_intron Homo_sapiens 0 204
ENST00000521291 RPL30-007 protein_coding Homo_sapiens 0 481
ENST00000521534 RPL30-013 retained_intron Homo_sapiens 0 254
ENST00000521726 RPL30-003 protein_coding Homo_sapiens 0 479
ENST00000523172 RPL30-008 protein_coding Homo_sapiens 0 252

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