C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 13532
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120373 Gm13532-001 ENSMUSG00000081642 10090 - 2:57628989-57629228 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainLiverMuscleOvaryPlacentaENSMUST00000120373
Transcript ID Adipose Bladder Brain Liver Muscle Ovary Placenta
ENSMUST00000120373 1.137±0.00 0.205±0.09 0.421±0.34 1.034±0.47 0.323±0.00 0.228±0.00 0.511±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007NB CIL_0007NB_0002 UCNEbase 2:56227555-57879432
CIL_0008JK CIL_0008JK_0002 VISTA 2:57217307-57818247
CIL_000756 CIL_000756_0002 CGP 2:57237635-58045860
CIL_0008JJ CIL_0008JJ_0002 VISTA 2:57316984-57917851
CIL_0008RB CIL_0008RB_0002 VISTA 2:57371881-57972832
CIL_0008SE CIL_0008SE_0002 VISTA 2:57493277-58094576
CIL_0008JI CIL_0008JI_0002 VISTA 2:57520408-58121348
CIL_00088Y CIL_00088Y_0002 VISTA 2:57578887-58179847

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000329806 RP11-558O12.1-001 processed_pseudogene Homo_sapiens 2e-36 156
ENST00000447672 RP11-28P17.3-001 processed_pseudogene Homo_sapiens 5.00264e-43 178
ENST00000457576 RPS27AP2-001 processed_pseudogene Homo_sapiens 0 255
ENST00000477681 CTD-2015H6.2-001 processed_pseudogene Homo_sapiens 0 193
ENST00000492222 RP11-51O6.1-001 transcribed_processed_pseudogene Homo_sapiens 0 281
ENST00000498403 RP11-1070A24.1-001 processed_pseudogene Homo_sapiens 0 224
ENST00000591758 RP11-51O6.1-002 processed_transcript Homo_sapiens 0 281
ENST00000597285 CTD-3214H19.12-001 processed_pseudogene Homo_sapiens 0 243

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