C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L3, pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120557 Rpl3-ps1-001 ENSMUSG00000084349 10090 + X:13202571-13203780 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000120557
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000120557 35.579±20.29 25.157±3.68 13.233±4.10 8.491±4.64 32.423±6.90 37.713±32.39 9.047±5.66 42.245±3.98 17.253±10.83 26.826±2.52 0.241±0.11 51.994±23.79 8.189±7.81 6.667±3.81

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005QB CIL_0005QB_0002 CGP X:13071498-13294052
CIL_0007LW CIL_0007LW_0002 UCNEbase X:13169486-13522078

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000011251 rpl3-001 protein_coding Danio_rerio 0 918
ENSDART00000138327 rpl3-003 protein_coding Danio_rerio 3e-34 150
ENST00000216146 RPL3-001 protein_coding Homo_sapiens 0 1509
ENST00000401609 RPL3-003 protein_coding Homo_sapiens 0 1504
ENST00000402527 RPL3-009 protein_coding Homo_sapiens 0 1208
ENST00000413027 RPL3P2-001 processed_pseudogene Homo_sapiens 0 1315
ENST00000414649 RPL3P2-001 processed_pseudogene Homo_sapiens 0 1315
ENST00000417615 RPL3P4-001 processed_pseudogene Homo_sapiens 0 538
ENST00000420536 RPL3-014 nonsense_mediated_decay Homo_sapiens 1.96182e-44 183
ENST00000427905 RPL3-011 protein_coding Homo_sapiens 0 863
ENST00000428665 RPL3P2-001 processed_pseudogene Homo_sapiens 0 1321
ENST00000434677 RPL3P2-001 processed_pseudogene Homo_sapiens 0 1303
ENST00000436852 RPL3P12-001 processed_pseudogene Homo_sapiens 0 1127
ENST00000437106 RPL3P1-001 processed_pseudogene Homo_sapiens 0 1101
ENST00000445022 RPL3P2-001 processed_pseudogene Homo_sapiens 0 1291
ENST00000449035 RPL3P2-001 processed_pseudogene Homo_sapiens 0 1327
ENST00000453303 RPL3-012 protein_coding Homo_sapiens 0 1029
ENST00000454216 RPL3P2-001 processed_pseudogene Homo_sapiens 0 1291
ENST00000463217 RPL3P9-001 processed_pseudogene Homo_sapiens 0 1234
ENST00000464182 RPL3-019 retained_intron Homo_sapiens 0 226
ENST00000465618 RPL3-002 processed_transcript Homo_sapiens 0 1057
ENST00000467105 RPL3-004 retained_intron Homo_sapiens 0 226
ENST00000467870 RPL3P3-001 processed_pseudogene Homo_sapiens 0 1253
ENST00000473638 RPL3-018 retained_intron Homo_sapiens 0 279
ENST00000474162 RPL3P6-001 processed_pseudogene Homo_sapiens 0 1112
ENST00000484358 RPL3-015 retained_intron Homo_sapiens 0 418

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