C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein SA, pseudogene 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120596 Rpsa-ps12-001 ENSMUSG00000080746 10090 - 4:149142497-149143388 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000120596
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000120596 0.205±0.06 1.927±0.89 0.014±0.00 0.303±0.00 0.453±0.31 0.227±0.14 0.075±0.04 0.157±0.09 0.383±0.42 0.104±0.06 0.292±0.24 0.098±0.12 0.060±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008S2 CIL_0008S2_0002 VISTA 4:148555953-149160332
CIL_00082Y CIL_00082Y_0002 VISTA 4:148576108-149176659
CIL_00085P CIL_00085P_0002 VISTA 4:148597228-149198219
CIL_0007WE CIL_0007WE_0002 VISTA 4:148621504-149222572
CIL_0008IM CIL_0008IM_0002 VISTA 4:148744049-149345133

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000301821 RPSA-001 protein_coding Homo_sapiens 0 1011
ENST00000354585 RPSAP58-201 protein_coding Homo_sapiens 0 1005
ENST00000412013 RPSAP63-001 processed_pseudogene Homo_sapiens 0 850
ENST00000412542 RP6-105D16.1-001 processed_pseudogene Homo_sapiens 0 896
ENST00000412645 AC016739.1-001 processed_pseudogene Homo_sapiens 0 651
ENST00000416785 RPSAP2-001 processed_pseudogene Homo_sapiens 0 778
ENST00000418207 RPSAP9-001 processed_pseudogene Homo_sapiens 0 972
ENST00000421048 RP4-635G19.1-001 processed_pseudogene Homo_sapiens 0 407
ENST00000427417 COMMD1-005 protein_coding Homo_sapiens 0 684
ENST00000429143 RPSAP14-001 processed_pseudogene Homo_sapiens 0 399
ENST00000429844 RPSAP8-001 processed_pseudogene Homo_sapiens 0 891
ENST00000433498 RPSAP53-001 processed_pseudogene Homo_sapiens 0 791
ENST00000437188 AC074008.1-001 processed_pseudogene Homo_sapiens 0 717
ENST00000442699 AC018462.3-001 processed_pseudogene Homo_sapiens 0 833
ENST00000443003 RPSA-002 protein_coding Homo_sapiens 0 952
ENST00000443010 AC097639.8-001 processed_pseudogene Homo_sapiens 0 876
ENST00000444166 COMMD1-008 protein_coding Homo_sapiens 0 645
ENST00000444599 RP11-366O20.5-001 processed_pseudogene Homo_sapiens 0 815
ENST00000446095 RPSAP23-001 processed_pseudogene Homo_sapiens 0 595
ENST00000448168 RPSAP15-001 processed_pseudogene Homo_sapiens 0 955
ENST00000458337 COMMD1-006 protein_coding Homo_sapiens 0 640
ENST00000458478 RPSA-008 protein_coding Homo_sapiens 0 917
ENST00000464073 RP11-187O7.1-001 transcribed_processed_pseudogene Homo_sapiens 0 965
ENST00000465940 RP11-58H15.1-001 transcribed_processed_pseudogene Homo_sapiens 0 734
ENST00000467439 RP11-162K6.1-001 processed_pseudogene Homo_sapiens 0 795
ENST00000470913 RPSAP37-001 processed_pseudogene Homo_sapiens 0 331
ENST00000477347 RPSAP55-001 processed_pseudogene Homo_sapiens 0 841
ENST00000478027 RPSA-003 processed_transcript Homo_sapiens 0 845
ENST00000479228 RPSAP47-001 processed_pseudogene Homo_sapiens 0 977
ENST00000483479 RP11-179A18.1-001 processed_pseudogene Homo_sapiens 0 854
ENST00000484897 RPSAP56-001 processed_pseudogene Homo_sapiens 0 889
ENST00000485258 RP11-600F24.1-001 processed_pseudogene Homo_sapiens 0 843
ENST00000488229 RPSAP4-001 processed_pseudogene Homo_sapiens 0 933
ENST00000494591 RP11-58H15.1-002 processed_transcript Homo_sapiens 0 734
ENST00000496398 RPSAP58-001 protein_coding Homo_sapiens 0 1005
ENST00000502477 RPSAP2-001 processed_pseudogene Homo_sapiens 0 778
ENST00000507015 RPSAP2-001 processed_pseudogene Homo_sapiens 0 773

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