C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 3835
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120752 Gm3835-001 ENSMUSG00000083922 10090 - 8:72429550-72429952 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000120752
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000120752 0.364±0.06 0.161±0.13 0.078±0.05 0.373±0.29 0.258±0.03 0.358±0.20 0.280±0.20 0.137±0.04 0.327±0.14 0.178±0.01 0.691±0.37 0.142±0.16 0.535±0.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00072E CIL_00072E_0002 CGP 8:72341001-72443870

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000230495 H3F3AP6-001 processed_pseudogene Homo_sapiens 0 580
ENST00000321285 RP11-402J6.3-001 processed_pseudogene Homo_sapiens 0 538
ENST00000366813 H3F3A-002 protein_coding Homo_sapiens 0 584
ENST00000366814 H3F3A-003 protein_coding Homo_sapiens 0 405
ENST00000366815 H3F3A-001 protein_coding Homo_sapiens 0 584
ENST00000366816 H3F3A-004 protein_coding Homo_sapiens 0 584
ENST00000369387 H3F3AP4-001 processed_pseudogene Homo_sapiens 0 580
ENST00000404612 HIST1H3PS1-001 processed_pseudogene Homo_sapiens 0 455
ENST00000416267 RP11-349N19.2-001 processed_pseudogene Homo_sapiens 0 536
ENST00000416765 RP1-22N22.1-001 processed_pseudogene Homo_sapiens 0 490
ENST00000421430 RP11-4M23.4-001 processed_pseudogene Homo_sapiens 0 431
ENST00000440551 H3F3BP1-001 processed_pseudogene Homo_sapiens 0 542
ENST00000443015 AC133141.1-001 processed_pseudogene Homo_sapiens 0 302
ENST00000475267 H3F3AP5-001 processed_pseudogene Homo_sapiens 0 520
ENST00000496255 RP11-473P24.2-001 processed_pseudogene Homo_sapiens 0 416
ENST00000505098 CTC-505O3.1-001 processed_pseudogene Homo_sapiens 0 473
ENST00000509149 CTC-470C15.1-001 processed_pseudogene Homo_sapiens 0 263
ENST00000547971 RP11-98E6.1-001 processed_pseudogene Homo_sapiens 0 250
ENST00000557753 RP11-452K20.1-001 processed_pseudogene Homo_sapiens 0 353
ENST00000559984 H3F3AP1-001 processed_pseudogene Homo_sapiens 0 320
ENST00000603240 RP11-27M5.1-001 processed_pseudogene Homo_sapiens 2e-39 165
ENST00000619270 CTD-2062A1.2-001 processed_pseudogene Homo_sapiens 0 278

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