C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 12504
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120860 Gm12504-002 ENSMUSG00000084274 10090 + 4:44121893-44124123 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000120860
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000120860 0.213±0.06 0.139±0.06 0.234±0.00 0.458±0.30 0.252±0.13 0.537±0.07 0.083±0.02 0.118±0.08 0.130±0.08 0.252±0.08 0.040±0.03 0.527±0.24 0.406±0.15 0.141±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006K4 CIL_0006K4_0002 CGP 4:44034075-44233789

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000341369 PTMA-002 protein_coding Homo_sapiens 0 905
ENST00000397627 PTMAP2-001 processed_pseudogene Homo_sapiens 0 250
ENST00000397729 PTMAP8-001 processed_pseudogene Homo_sapiens 0 193
ENST00000409115 PTMA-001 protein_coding Homo_sapiens 0 898
ENST00000409321 PTMA-012 protein_coding Homo_sapiens 0 446
ENST00000409683 PTMA-007 protein_coding Homo_sapiens 0 758
ENST00000410064 PTMA-004 protein_coding Homo_sapiens 0 209
ENST00000411648 PTMAP1-001 processed_pseudogene Homo_sapiens 3.00018e-42 174
ENST00000412128 PTMA-008 protein_coding Homo_sapiens 0 638
ENST00000442851 PTMAP1-001 processed_pseudogene Homo_sapiens 7.00649e-44 180
ENST00000444251 PTMAP1-001 processed_pseudogene Homo_sapiens 3.00018e-42 174
ENST00000447774 PTMAP1-001 processed_pseudogene Homo_sapiens 3.00018e-42 174
ENST00000448874 PTMA-011 nonsense_mediated_decay Homo_sapiens 0 843
ENST00000455552 PTMAP1-001 processed_pseudogene Homo_sapiens 3.00018e-42 174
ENST00000456700 PTMAP1-001 processed_pseudogene Homo_sapiens 3.00018e-42 174
ENST00000457022 PTMAP1-001 processed_pseudogene Homo_sapiens 3.00018e-42 174
ENST00000466801 PTMA-013 processed_transcript Homo_sapiens 0 305
ENST00000467816 PTMA-010 retained_intron Homo_sapiens 2.94273e-44 182
ENST00000468027 PTMA-006 retained_intron Homo_sapiens 0 244
ENST00000481928 PTMA-003 retained_intron Homo_sapiens 0 843
ENST00000602494 RP11-330M2.4-001 processed_pseudogene Homo_sapiens 0 200
ENST00000607242 PTMAP5-002 processed_transcript Homo_sapiens 0 841
ENST00000612829 PTMA-201 protein_coding Homo_sapiens 0 843

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