C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 11472
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121305 Gm11472-001 ENSMUSG00000081946 10090 - 2:167087184-167087739 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000121305
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000121305 0.148±0.06 0.021±0.00 0.018±0.00 0.379±0.25 0.103±0.00 0.328±0.15 0.057±0.00 0.129±0.00 0.282±0.00 0.224±0.00 0.502±0.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008I4 CIL_0008I4_0002 VISTA 2:167024358-167627099

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000332968 RPL17-C18orf32-003 protein_coding Homo_sapiens 0 460
ENST00000391360 RP11-347C18.1-001 processed_pseudogene Homo_sapiens 0 488
ENST00000394133 RP11-624L12.1-001 processed_pseudogene Homo_sapiens 0 531
ENST00000396131 RPL17P50-001 processed_pseudogene Homo_sapiens 0 479
ENST00000404330 RPL17P25-001 processed_pseudogene Homo_sapiens 0 494
ENST00000414070 RP11-20O24.4-001 processed_pseudogene Homo_sapiens 0 610
ENST00000417063 AC020983.5-001 processed_pseudogene Homo_sapiens 0 484
ENST00000418495 RPL17-201 protein_coding Homo_sapiens 0 621
ENST00000420302 RP11-215A21.2-001 processed_pseudogene Homo_sapiens 0 569
ENST00000422360 RPL17P43-001 processed_pseudogene Homo_sapiens 0 387
ENST00000429025 CTA-440B3.1-001 processed_pseudogene Homo_sapiens 0 339
ENST00000432914 AC069154.4-001 processed_pseudogene Homo_sapiens 0 364
ENST00000443728 RPL17P49-001 processed_pseudogene Homo_sapiens 3e-39 165
ENST00000445757 AC007677.2-001 processed_pseudogene Homo_sapiens 0 331
ENST00000446498 RP3-476K8.4-001 processed_pseudogene Homo_sapiens 0 542
ENST00000447415 RP4-612B15.2-001 processed_pseudogene Homo_sapiens 0 555
ENST00000448403 RP11-383G10.3-001 processed_pseudogene Homo_sapiens 0 525
ENST00000456309 RP11-317B3.2-001 processed_pseudogene Homo_sapiens 0 368
ENST00000461464 RPL17P20-001 processed_pseudogene Homo_sapiens 0 466
ENST00000471722 RP4-706A16.3-001 processed_pseudogene Homo_sapiens 0 621
ENST00000488371 RP11-864J10.2-001 processed_pseudogene Homo_sapiens 0 424
ENST00000491913 RPL17P2-001 processed_pseudogene Homo_sapiens 0 339
ENST00000498103 RP11-592N21.1-001 processed_pseudogene Homo_sapiens 0 599
ENST00000498256 RPL17P33-001 processed_pseudogene Homo_sapiens 0 566
ENST00000577910 RPL17-C18orf32-002 nonsense_mediated_decay Homo_sapiens 0 621
ENST00000578532 RPL17-017 protein_coding Homo_sapiens 0 566
ENST00000579248 RPL17-018 protein_coding Homo_sapiens 0 621
ENST00000579408 RPL17-003 protein_coding Homo_sapiens 0 621
ENST00000579820 C18orf32-201 protein_coding Homo_sapiens 0 460
ENST00000580210 RPL17-015 protein_coding Homo_sapiens 0 582
ENST00000580261 RPL17-001 protein_coding Homo_sapiens 0 621
ENST00000580387 RPL17-019 protein_coding Homo_sapiens 0 409
ENST00000581091 RPL17-012 processed_transcript Homo_sapiens 0 464
ENST00000581373 RPL17-002 protein_coding Homo_sapiens 0 527
ENST00000581741 RPL17-009 retained_intron Homo_sapiens 0 351
ENST00000582588 RPL17-020 retained_intron Homo_sapiens 0 272
ENST00000583036 RPL17-008 protein_coding Homo_sapiens 0 444
ENST00000583637 RPL17-016 protein_coding Homo_sapiens 0 577
ENST00000584364 RPL17-014 retained_intron Homo_sapiens 0 531
ENST00000584895 RPL17-C18orf32-001 protein_coding Homo_sapiens 0 555
ENST00000596405 CTD-2550O8.7-001 processed_pseudogene Homo_sapiens 0 414
ENST00000615760 RPL17-024 protein_coding Homo_sapiens 0 420
ENST00000617346 RPL17-022 protein_coding Homo_sapiens 0 555
ENST00000618613 RPL17-202 protein_coding Homo_sapiens 0 621
ENST00000618619 RPL17-023 protein_coding Homo_sapiens 0 621

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