C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GATA binding protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121312 Gata4-003 ENSMUSG00000021944 10090 - 14:63198924-63213607 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000121312
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000121312 0.083±0.02 0.215±0.00 0.003±0.00 0.199±0.08 0.092±0.05 13.844±2.21 0.040±0.02 3.220±1.35 0.316±0.02 0.039±0.00 30.394±8.26 1.751±0.86 1.745±0.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007PQ CIL_0007PQ_0002 VISTA 14:62762164-63363066
CIL_000919 CIL_000919_0002 VISTA 14:62906721-63507169
CIL_0008Y4 CIL_0008Y4_0002 VISTA 14:63067789-63669845

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000977 IDA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0000981 IDA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0001701 IMP in utero embryonic development
GO:0001702 IMP gastrulation with mouth forming second
GO:0001706 IMP endoderm formation
GO:0003181 IGI atrioventricular valve morphogenesis
GO:0003197 IGI endocardial cushion development
GO:0003229 IGI ventricular cardiac muscle tissue development
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0003705 IDA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0007267 IMP cell-cell signaling
GO:0007283 IMP spermatogenesis
GO:0007507 IMP heart development
GO:0008270 IEA zinc ion binding
GO:0010468 IGI regulation of gene expression
GO:0014898 IMP cardiac muscle hypertrophy in response to stress
GO:0023019 IDA signal transduction involved in regulation of gene expression
GO:0030509 IDA BMP signaling pathway
GO:0035050 IMP embryonic heart tube development
GO:0035054 IMP embryonic heart tube anterior/posterior pattern specification
GO:0035239 IGI tube morphogenesis
GO:0043565 IDA sequence-specific DNA binding
GO:0043627 IDA response to estrogen
GO:0044212 ISO transcription regulatory region DNA binding
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048557 IMP embryonic digestive tract morphogenesis
GO:0048598 IMP embryonic morphogenesis
GO:0048617 IMP embryonic foregut morphogenesis
GO:0048738 IGI cardiac muscle tissue development
GO:0055007 IGI cardiac muscle cell differentiation
GO:0060008 IMP Sertoli cell differentiation
GO:0060043 IMP regulation of cardiac muscle cell proliferation
GO:0060045 IGI positive regulation of cardiac muscle cell proliferation
GO:0060070 IDA canonical Wnt signaling pathway
GO:0060395 IDA SMAD protein signal transduction
GO:0060464 IMP lung lobe formation
GO:0060575 ISO intestinal epithelial cell differentiation
GO:0071371 IDA cellular response to gonadotropin stimulus
GO:0071372 IDA cellular response to follicle-stimulating hormone stimulus
GO:0072148 IMP epithelial cell fate commitment
GO:0072520 IMP seminiferous tubule development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000335135 GATA4-001 protein_coding Homo_sapiens 0 905
ENST00000341105 GATA2-001 protein_coding Homo_sapiens 4e-37 161
ENST00000430265 GATA2-003 protein_coding Homo_sapiens 4e-30 137
ENST00000487848 GATA2-002 protein_coding Homo_sapiens 2e-37 161
ENST00000526021 GATA4-008 retained_intron Homo_sapiens 0 363
ENST00000526716 GATA4-007 protein_coding Homo_sapiens 0 676
ENST00000528712 GATA4-004 protein_coding Homo_sapiens 0 907
ENST00000532059 GATA4-005 protein_coding Homo_sapiens 0 872
ENST00000622443 GATA4-201 protein_coding Homo_sapiens 0 905

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