C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 11645
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121589 Gm11645-001 ENSMUSG00000080895 10090 - 2:143506411-143507059 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainLiverMuscleOvaryPlacentaTestisENSMUST00000121589
Transcript ID Adipose Bladder Brain Liver Muscle Ovary Placenta Testis
ENSMUST00000121589 0.070±0.00 0.077±0.05 0.084±0.04 0.023±0.01 0.062±0.00 0.178±0.10 0.043±0.03 0.058±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002DI CIL_0002DI_0002 CGP 2:143078473-143816285

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255320 HMGB1P5-001 transcribed_processed_pseudogene Homo_sapiens 0 697
ENST00000326004 HMGB1-003 protein_coding Homo_sapiens 0 538
ENST00000339872 HMGB1-001 protein_coding Homo_sapiens 0 697
ENST00000341423 HMGB1-004 protein_coding Homo_sapiens 0 697
ENST00000395823 HMGB1P10-001 processed_pseudogene Homo_sapiens 0 588
ENST00000399489 HMGB1-009 protein_coding Homo_sapiens 0 538
ENST00000399494 HMGB1-011 protein_coding Homo_sapiens 0 697
ENST00000405805 HMGB1-012 protein_coding Homo_sapiens 0 697
ENST00000429856 HMGB1P9-001 processed_pseudogene Homo_sapiens 0 562
ENST00000437242 HMGB1P31-001 processed_pseudogene Homo_sapiens 0 305
ENST00000439613 HMGB1P37-001 processed_pseudogene Homo_sapiens 0 499
ENST00000451497 HMGB1P5-002 processed_transcript Homo_sapiens 0 518
ENST00000452520 HMGB1P26-001 processed_pseudogene Homo_sapiens 0 466
ENST00000468384 HMGB1-007 processed_transcript Homo_sapiens 0 224
ENST00000522557 HMGB1P1-001 processed_pseudogene Homo_sapiens 0 645
ENST00000558211 HMGB1P8-001 processed_pseudogene Homo_sapiens 0 200
ENST00000569046 RP11-673C5.1-001 processed_pseudogene Homo_sapiens 0 673
ENST00000611897 RP11-19G24.3-002 processed_transcript Homo_sapiens 9.99967e-42 172
ENST00000615653 RP11-19G24.3-001 transcribed_processed_pseudogene Homo_sapiens 0 532

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