C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 11363
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121672 Gm11363-001 ENSMUSG00000082730 10090 - 13:29130250-29130758 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartOvaryENSMUST00000121672
Transcript ID Brain Heart Ovary
ENSMUST00000121672 0.020±0.00 0.105±0.00 0.094±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084D CIL_00084D_0002 VISTA 13:28658215-29260360
CIL_0005MW CIL_0005MW_0002 CGP 13:28948919-29855674

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000332968 RPL17-C18orf32-003 protein_coding Homo_sapiens 0 383
ENST00000391360 RP11-347C18.1-001 processed_pseudogene Homo_sapiens 0 333
ENST00000404330 RPL17P25-001 processed_pseudogene Homo_sapiens 0 374
ENST00000407033 RPL17P26-001 processed_pseudogene Homo_sapiens 0 379
ENST00000414070 RP11-20O24.4-001 processed_pseudogene Homo_sapiens 0 438
ENST00000416091 AC007272.3-001 processed_pseudogene Homo_sapiens 0 233
ENST00000418495 RPL17-201 protein_coding Homo_sapiens 0 446
ENST00000420302 RP11-215A21.2-001 processed_pseudogene Homo_sapiens 0 411
ENST00000429025 CTA-440B3.1-001 processed_pseudogene Homo_sapiens 0 278
ENST00000429934 RP11-383F6.1-001 processed_pseudogene Homo_sapiens 0 243
ENST00000443728 RPL17P49-001 processed_pseudogene Homo_sapiens 5e-27 124
ENST00000444020 RP11-1029M24.1-001 processed_pseudogene Homo_sapiens 0 351
ENST00000445304 RPL17P1-001 processed_pseudogene Homo_sapiens 0 268
ENST00000445757 AC007677.2-001 processed_pseudogene Homo_sapiens 0 270
ENST00000446498 RP3-476K8.4-001 processed_pseudogene Homo_sapiens 0 416
ENST00000448403 RP11-383G10.3-001 processed_pseudogene Homo_sapiens 0 364
ENST00000461464 RPL17P20-001 processed_pseudogene Homo_sapiens 0 350
ENST00000467688 RPL17P22-001 processed_pseudogene Homo_sapiens 0 416
ENST00000469329 RPL17P41-001 processed_pseudogene Homo_sapiens 0 331
ENST00000471722 RP4-706A16.3-001 processed_pseudogene Homo_sapiens 0 457
ENST00000483964 RP11-7F18.1-001 processed_pseudogene Homo_sapiens 0 355
ENST00000491913 RPL17P2-001 processed_pseudogene Homo_sapiens 0 274
ENST00000498256 RPL17P33-001 processed_pseudogene Homo_sapiens 0 427
ENST00000511559 RP11-115A14.1-001 processed_pseudogene Homo_sapiens 2e-28 130
ENST00000524791 RP11-757C15.4-001 processed_pseudogene Homo_sapiens 0 202
ENST00000560214 RP11-14C10.2-001 processed_pseudogene Homo_sapiens 1e-39 167
ENST00000577910 RPL17-C18orf32-002 nonsense_mediated_decay Homo_sapiens 0 446
ENST00000578532 RPL17-017 protein_coding Homo_sapiens 0 446
ENST00000579248 RPL17-018 protein_coding Homo_sapiens 0 446
ENST00000579408 RPL17-003 protein_coding Homo_sapiens 0 446
ENST00000579820 C18orf32-201 protein_coding Homo_sapiens 0 383
ENST00000580210 RPL17-015 protein_coding Homo_sapiens 0 424
ENST00000580261 RPL17-001 protein_coding Homo_sapiens 0 446
ENST00000580387 RPL17-019 protein_coding Homo_sapiens 0 333
ENST00000581091 RPL17-012 processed_transcript Homo_sapiens 0 381
ENST00000581373 RPL17-002 protein_coding Homo_sapiens 0 383
ENST00000581741 RPL17-009 retained_intron Homo_sapiens 0 281
ENST00000582935 RPL17-013 retained_intron Homo_sapiens 0 235
ENST00000583036 RPL17-008 protein_coding Homo_sapiens 0 374
ENST00000583637 RPL17-016 protein_coding Homo_sapiens 0 446
ENST00000584364 RPL17-014 retained_intron Homo_sapiens 0 383
ENST00000584895 RPL17-C18orf32-001 protein_coding Homo_sapiens 0 446
ENST00000615479 RPL17-025 protein_coding Homo_sapiens 0 259
ENST00000615760 RPL17-024 protein_coding Homo_sapiens 0 344
ENST00000617346 RPL17-022 protein_coding Homo_sapiens 0 446
ENST00000618613 RPL17-202 protein_coding Homo_sapiens 0 446
ENST00000618619 RPL17-023 protein_coding Homo_sapiens 0 446

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