C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 12608
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000122013 Gm12608-001 ENSMUSG00000080808 10090 - 4:89442217-89444644 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverLungOvaryPlacentaENSMUST00000122013
Transcript ID Brain Liver Lung Ovary Placenta
ENSMUST00000122013 0.004±0.00 0.007±0.00 0.065±0.00 0.083±0.02 0.014±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YE CIL_0007YE_0002 VISTA 4:89088208-89693783
CIL_0007U7 CIL_0007U7_0002 VISTA 4:89092538-89696083
CIL_0007YH CIL_0007YH_0002 VISTA 4:89093251-89700067
CIL_0007YG CIL_0007YG_0002 VISTA 4:89099831-89706701
CIL_0007U8 CIL_0007U8_0002 VISTA 4:89105459-89706480
CIL_00095D CIL_00095D_0002 VISTA 4:89105812-89710925
CIL_000945 CIL_000945_0002 VISTA 4:89116711-89721138
CIL_0008WE CIL_0008WE_0002 VISTA 4:89121046-89725353
CIL_0007YC CIL_0007YC_0002 VISTA 4:89125337-89732294
CIL_0008P9 CIL_0008P9_0002 VISTA 4:89126411-89729104
CIL_00099P CIL_00099P_0002 VISTA 4:89127311-89729167
CIL_00099O CIL_00099O_0002 VISTA 4:89131159-89734211
CIL_0008TL CIL_0008TL_0002 VISTA 4:89131716-89739478
CIL_00094Y CIL_00094Y_0002 VISTA 4:89144756-89747133
CIL_0008SY CIL_0008SY_0002 VISTA 4:89146082-89752900
CIL_0008T0 CIL_0008T0_0002 VISTA 4:89152132-89755541
CIL_00085X CIL_00085X_0002 VISTA 4:89155335-89760083
CIL_00094Z CIL_00094Z_0002 VISTA 4:89157896-89760037
CIL_0008GG CIL_0008GG_0002 VISTA 4:89168919-89771433
CIL_00074F CIL_00074F_0002 CGP 4:89306289-89694772

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000345042 HSPD1-201 protein_coding Homo_sapiens 0 1504
ENST00000388967 HSPD1P6-001 transcribed_processed_pseudogene Homo_sapiens 0 1175
ENST00000388968 HSPD1-001 protein_coding Homo_sapiens 0 1504
ENST00000426480 HSPD1-009 protein_coding Homo_sapiens 0 322
ENST00000428204 HSPD1-010 protein_coding Homo_sapiens 0 265
ENST00000429127 RP11-69M1.3-001 processed_pseudogene Homo_sapiens 0 719
ENST00000430176 HSPD1-013 protein_coding Homo_sapiens 0 560
ENST00000439605 HSPD1-011 protein_coding Homo_sapiens 0 246
ENST00000447985 HSPD1P7-001 processed_pseudogene Homo_sapiens 0 651
ENST00000452200 HSPD1-006 protein_coding Homo_sapiens 0 545
ENST00000461097 HSPD1-014 retained_intron Homo_sapiens 0 339
ENST00000476746 HSPD1-008 retained_intron Homo_sapiens 0 422
ENST00000482167 HSPD1-004 retained_intron Homo_sapiens 0 252
ENST00000491249 HSPD1-003 retained_intron Homo_sapiens 0 510
ENST00000503199 HSPD1P1-001 processed_pseudogene Homo_sapiens 0 1410
ENST00000504252 HSPD1P18-001 processed_pseudogene Homo_sapiens 2e-39 165
ENST00000508643 HSPD1P11-001 processed_pseudogene Homo_sapiens 0 209
ENST00000511127 HSPD1P5-001 processed_pseudogene Homo_sapiens 0 1288
ENST00000530524 HSPD1P2-001 processed_pseudogene Homo_sapiens 0 1125
ENST00000533477 HSPD1P3-001 processed_pseudogene Homo_sapiens 0 1085
ENST00000547203 RP11-153M3.1-001 processed_pseudogene Homo_sapiens 0 1319

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