C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: latrophilin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000122356 Lphn3-009 ENSMUSG00000037605 10090 + 5:81309912-81795216 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungOvaryPlacentaENSMUST00000122356
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Ovary Placenta
ENSMUST00000122356 1.702±1.33 0.350±0.17 0.593±0.28 0.861±0.11 0.907±0.24 0.185±0.08 0.248±0.10 0.092±0.04 10.004±3.89 4.528±1.61 0.155±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001WQ CIL_0001WQ_0002 CGP 5:77349240-81825133
CIL_0001WJ CIL_0001WJ_0002 CGP 5:81020138-83355195

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004930 IEA G-protein coupled receptor activity
GO:0005886 IEA plasma membrane
GO:0007218 IEA neuropeptide signaling pathway
GO:0016021 IEA integral component of membrane
GO:0030246 IEA carbohydrate binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000131113 LPHN3 (2 of 2)-201 protein_coding Danio_rerio 0 327
ENST00000502815 LPHN3-002 protein_coding Homo_sapiens 0 3332
ENST00000504896 LPHN3-012 protein_coding Homo_sapiens 0 4431
ENST00000506700 LPHN3-015 protein_coding Homo_sapiens 0 4593
ENST00000506720 LPHN3-008 protein_coding Homo_sapiens 0 4713
ENST00000506746 LPHN3-009 protein_coding Homo_sapiens 0 4872
ENST00000507164 LPHN3-004 protein_coding Homo_sapiens 0 4878
ENST00000507625 LPHN3-016 protein_coding Homo_sapiens 0 5954
ENST00000508078 LPHN3-017 processed_transcript Homo_sapiens 0 614
ENST00000508693 LPHN3-011 protein_coding Homo_sapiens 0 4719
ENST00000508946 LPHN3-007 protein_coding Homo_sapiens 0 4431
ENST00000509089 LPHN3-018 retained_intron Homo_sapiens 0 291
ENST00000509896 LPHN3-013 protein_coding Homo_sapiens 0 4723
ENST00000511324 LPHN3-014 protein_coding Homo_sapiens 0 4881
ENST00000512091 LPHN3-001 protein_coding Homo_sapiens 0 4434
ENST00000514157 LPHN3-006 protein_coding Homo_sapiens 0 4590
ENST00000514591 LPHN3-003 protein_coding Homo_sapiens 0 5509
ENST00000514996 LPHN3-010 protein_coding Homo_sapiens 0 4590
ENST00000545650 LPHN3-201 protein_coding Homo_sapiens 0 5064

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