C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: elongation protein 4 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000122965 Elp4-001 ENSMUSG00000027167 10090 - 2:105701027-105904564 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000122965
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000122965 3.092±0.56 2.818±1.00 2.415±0.16 3.448±2.28 2.484±1.02 2.565±0.48 1.451±0.31 2.134±0.24 3.300±0.99 2.421±0.27 0.682±0.23 3.480±1.88 1.245±0.64 1.946±0.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096J CIL_00096J_0002 VISTA 2:105147292-105748402
CIL_0007PY CIL_0007PY_0002 VISTA 2:105215855-105816711
CIL_0007JA CIL_0007JA_0005 UCNEbase 2:105301487-106575818
CIL_000914 CIL_000914_0002 VISTA 2:105311041-105914025
CIL_0007XG CIL_0007XG_0002 VISTA 2:105389599-105991449
CIL_0008UP CIL_0008UP_0002 VISTA 2:105418757-106020536
CIL_0007UQ CIL_0007UQ_0002 VISTA 2:105478530-106080039
CIL_0008KI CIL_0008KI_0002 VISTA 2:105533387-106134697
CIL_00096G CIL_00096G_0002 VISTA 2:105613336-106214486
CIL_0000ZD CIL_0000ZD_0002 CGP 2:105668900-105904564
CIL_0000ZE CIL_0000ZE_0002 CGP 2:105701027-105965558

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 ISS cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006357 ISS regulation of transcription from RNA polymerase II promoter
GO:0008023 ISS transcription elongation factor complex
GO:0008607 ISS phosphorylase kinase regulator activity
GO:0033588 ISS Elongator holoenzyme complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000350638 ELP4-001 protein_coding Homo_sapiens 0 1303
ENST00000379163 ELP4-004 protein_coding Homo_sapiens 0 1070
ENST00000395934 ELP4-003 protein_coding Homo_sapiens 0 1077
ENST00000419022 PAX6-201 protein_coding Homo_sapiens 0 449
ENST00000474374 ELP4-002 nonsense_mediated_decay Homo_sapiens 0 1064
ENST00000606377 PAX6-202 protein_coding Homo_sapiens 0 449

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