C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ssu-2 homolog (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000123254 Ssu2-003 ENSMUSG00000034387 10090 - 6:112369275-112375720 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000123254
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000123254 1.349±0.77 21.754±7.03 0.247±0.00 0.092±0.04 0.575±0.15 2.114±0.52 1.093±0.30 0.849±0.18 0.041±0.00 0.414±0.21 0.209±0.19 4.405±1.75 0.472±0.38 0.657±0.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000001 CIL_000001_0002 CGP 6:112273758-112388023
CIL_0005S5 CIL_0005S5_0002 CGP 6:112359324-112472871

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000317371 SSUH2-005 protein_coding Homo_sapiens 0 357
ENST00000341795 SSUH2-001 protein_coding Homo_sapiens 0 357
ENST00000413305 SSUH2-002 nonsense_mediated_decay Homo_sapiens 0 357
ENST00000415132 SSUH2-008 nonsense_mediated_decay Homo_sapiens 0 196
ENST00000420394 SSUH2-003 nonsense_mediated_decay Homo_sapiens 0 357
ENST00000435138 SSUH2-007 nonsense_mediated_decay Homo_sapiens 0 357
ENST00000455157 SSUH2-004 nonsense_mediated_decay Homo_sapiens 0 357
ENST00000495366 SSUH2-006 retained_intron Homo_sapiens 0 196
ENST00000544814 SSUH2-201 protein_coding Homo_sapiens 0 357

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