C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Yip1 domain family, member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000123311 Yipf3-003 ENSMUSG00000071074 10090 + 17:46248125-46251488 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastLiverLungMuscleOvaryPlacentaTestisENSMUST00000123311
Transcript ID Adipose Bladder Breast Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000123311 46.570±0.00 15.847±0.00 62.514±0.00 23.980±4.50 35.398±6.84 6.406±0.07 46.164±7.41 20.659±2.75 18.566±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YI CIL_0008YI_0002 VISTA 17:45708824-46310190
CIL_0005N0 CIL_0005N0_0002 CGP 17:46243920-46252537
CIL_0002NT CIL_0002NT_0002 CGP 17:46248080-46257316

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000372417 YIPF3-006 retained_intron Homo_sapiens 0 424
ENST00000372422 YIPF3-003 protein_coding Homo_sapiens 0 673
ENST00000416380 YIPF3-004 nonsense_mediated_decay Homo_sapiens 0 499
ENST00000455768 YIPF3-005 nonsense_mediated_decay Homo_sapiens 0 503
ENST00000460547 YIPF3-009 nonsense_mediated_decay Homo_sapiens 0.000000000006 77
ENST00000488966 YIPF3-008 retained_intron Homo_sapiens 3e-39 165
ENST00000490447 YIPF3-014 nonsense_mediated_decay Homo_sapiens 0 673
ENST00000500090 YIPF3-017 protein_coding Homo_sapiens 0 246
ENST00000502714 YIPF3-016 retained_intron Homo_sapiens 0.000000000003 77
ENST00000503972 YIPF3-020 protein_coding Homo_sapiens 7e-39 165
ENST00000506469 YIPF3-012 protein_coding Homo_sapiens 0 673
ENST00000510102 YIPF3-001 nonsense_mediated_decay Homo_sapiens 0 673
ENST00000511831 YIPF3-018 protein_coding Homo_sapiens 0.00000006 62
ENST00000514627 YIPF3-019 retained_intron Homo_sapiens 7e-39 165

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