C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000123415  |
Taf6-003 |
ENSMUSG00000036980 |
10090 | - |
5:138182675-138187226  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0008QI | CIL_0008QI_0002 | VISTA | 5:137705744-138314172 |
| CIL_0003DY | CIL_0003DY_0002 | CGP | 5:138164583-138178708 |
| CIL_0005LK | CIL_0005LK_0002 | CGP | 5:138172002-138187451 |
| CIL_0005LJ | CIL_0005LJ_0002 | CGP | 5:138178617-138193918 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0003677 | IDA | DNA binding |
| GO:0005515 | IPI | protein binding |
| GO:0005634 | IDA | nucleus |
| GO:0005669 | ISO | transcription factor TFIID complex |
| GO:0046982 | IEA | protein heterodimerization activity |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000421980
|
TAF6-003 | nonsense_mediated_decay | Homo_sapiens | 0 | 220 |
|
ENST00000451699
|
TAF6-009 | protein_coding | Homo_sapiens | 4e-30 | 135 |
|
ENST00000452041
|
TAF6-007 | protein_coding | Homo_sapiens | 0.00000007 | 64 |
|
ENST00000452438
|
TAF6-014 | protein_coding | Homo_sapiens | 0.00000002 | 64 |
|
ENST00000453269
|
TAF6-004 | protein_coding | Homo_sapiens | 2e-29 | 135 |
|
ENST00000460673
|
TAF6-012 | protein_coding | Homo_sapiens | 2e-27 | 126 |
|
ENST00000497233
|
TAF6-011 | processed_transcript | Homo_sapiens | 3e-30 | 135 |
