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C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | high mobility group box 1 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000123645  |
Hmgb1-005 |
ENSMUSG00000066551 |
10090 | - |
5:149050373-149052981  |
retained_intron |
|
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Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0007UA | CIL_0007UA_0002 | VISTA | 5:149020224-149622595 |
| CIL_0004CF | CIL_0004CF_0002 | CGP | 5:149046702-149215434 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| No GO terms available. | ||
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000326004
|
HMGB1-003 | protein_coding | Homo_sapiens | 0 | 372 |
|
ENST00000339872
|
HMGB1-001 | protein_coding | Homo_sapiens | 0 | 246 |
|
ENST00000341423
|
HMGB1-004 | protein_coding | Homo_sapiens | 0 | 372 |
|
ENST00000399489
|
HMGB1-009 | protein_coding | Homo_sapiens | 0 | 246 |
|
ENST00000399494
|
HMGB1-011 | protein_coding | Homo_sapiens | 0 | 248 |
|
ENST00000405805
|
HMGB1-012 | protein_coding | Homo_sapiens | 0 | 246 |
|
ENST00000438594
|
HMGB1P12-001 | processed_pseudogene | Homo_sapiens | 5.04467e-44 | 182 |
|
ENST00000468384
|
HMGB1-007 | processed_transcript | Homo_sapiens | 0 | 396 |
|
ENST00000611897
|
RP11-19G24.3-002 | processed_transcript | Homo_sapiens | 0 | 268 |
