C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox B1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000123805 Hoxb1-002 ENSMUSG00000018973 10090 + 11:96366258-96367221 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainLiverOvaryPlacentaENSMUST00000123805
Transcript ID Bladder Brain Liver Ovary Placenta
ENSMUST00000123805 0.032±0.00 0.012±0.00 0.011±0.00 0.058±0.03 0.012±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZM CIL_0007ZM_0002 VISTA 11:95992065-96592579

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000057730 dbx2-201 protein_coding Danio_rerio 0.000000006 66
ENSDART00000040368 mnx2b-001 protein_coding Danio_rerio 0.00000002 64
ENSDART00000114035 mnx2b-002 protein_coding Danio_rerio 0.00000002 64
ENSDART00000136282 atic-005 processed_transcript Danio_rerio 0.00000008 62
ENSDART00000139261 atic-003 processed_transcript Danio_rerio 0.00000008 62
ENSDART00000137670 atic-002 processed_transcript Danio_rerio 0.00000008 62
ENST00000239151 HOXB5-001 protein_coding Homo_sapiens 0.0000002 62
ENST00000249440 HOXD3-001 protein_coding Homo_sapiens 0.000000000002 79
ENST00000311626 HOXB3-007 protein_coding Homo_sapiens 0.00000000000006 84
ENST00000332503 HOXB4-001 protein_coding Homo_sapiens 1e-16 94
ENST00000410016 HOXD3-004 protein_coding Homo_sapiens 0.000000000003 79
ENST00000422806 NKX1-1-001 protein_coding Homo_sapiens 0.00002 55
ENST00000460160 HOXB3-006 protein_coding Homo_sapiens 0.00000000000003 84
ENST00000468418 HOXD3-001 nonsense_mediated_decay Homo_sapiens 0.000000000004 79
ENST00000470495 HOXB3-001 protein_coding Homo_sapiens 0.0000000000001 84
ENST00000472863 HOXB3-003 protein_coding Homo_sapiens 0.00000000000004 84
ENST00000476342 HOXB3-004 protein_coding Homo_sapiens 0.00000000000003 84
ENST00000489475 HOXB3-005 protein_coding Homo_sapiens 0.00000000000004 84
ENST00000490677 HOXB3-008 protein_coding Homo_sapiens 0.00000000000003 84
ENST00000498678 HOXB3-002 protein_coding Homo_sapiens 0.00000000000005 84

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