C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: SMT3 suppressor of mif two 3 homolog 1 (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000123857 Sumo1-002 ENSMUSG00000026021 10090 - 1:59643996-59670834 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonLiverENSMUST00000123857
Transcript ID Adrenal Colon Liver
ENSMUST00000123857 3.074±0.00 6.860±1.53 1.628±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CR CIL_0009CR_0002 VISTA 1:59040862-59642046
CIL_00020N CIL_00020N_0002 CGP 1:59482424-59636417
CIL_00020U CIL_00020U_0002 CGP 1:59516264-59670834
CIL_00020T CIL_00020T_0002 CGP 1:59586558-59719044

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000392244 SUMO1-007 protein_coding Homo_sapiens 1e-31 141
ENST00000392245 SUMO1-201 protein_coding Homo_sapiens 0 412
ENST00000392246 SUMO1-001 protein_coding Homo_sapiens 0 412
ENST00000409181 SUMO1-005 protein_coding Homo_sapiens 0 392
ENST00000409205 SUMO1-010 protein_coding Homo_sapiens 0 244
ENST00000409368 SUMO1-002 protein_coding Homo_sapiens 0 407
ENST00000409498 SUMO1-003 protein_coding Homo_sapiens 0 252
ENST00000409627 SUMO1-006 nonsense_mediated_decay Homo_sapiens 0 246
ENST00000409712 SUMO1-004 protein_coding Homo_sapiens 0 388
ENST00000429430 SUMO1P4-001 processed_pseudogene Homo_sapiens 0 263
ENST00000439961 SUMO1P3-001 processed_pseudogene Homo_sapiens 0 265
ENST00000452524 SUMO1P2-001 processed_pseudogene Homo_sapiens 0 224
ENST00000469034 SUMO1-008 processed_transcript Homo_sapiens 0 252
ENST00000513479 CTD-2347I17.1-001 processed_pseudogene Homo_sapiens 0 207

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