C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PTPRF interacting protein, binding protein 1 (liprin beta 1)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000123902 Ppfibp1-004 ENSMUSG00000016487 10090 + 6:146999545-147032023 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonOvaryTestisENSMUST00000123902
Transcript ID Adipose Adrenal Brain Breast Colon Ovary Testis
ENSMUST00000123902 2.681±0.17 1.113±0.29 0.655±0.11 1.947±0.56 0.769±0.00 1.486±0.00 0.582±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056H CIL_00056H_0002 CGP 6:146850104-147032025

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000228425 PPFIBP1-001 protein_coding Homo_sapiens 0 1720
ENST00000318304 PPFIBP1-007 protein_coding Homo_sapiens 0 2073
ENST00000537927 PPFIBP1-003 protein_coding Homo_sapiens 0 2073
ENST00000539326 PPFIBP1-012 protein_coding Homo_sapiens 0 813
ENST00000540114 PPFIBP1-002 protein_coding Homo_sapiens 0 1677
ENST00000540256 PPFIBP1-013 retained_intron Homo_sapiens 0 409
ENST00000540503 PPFIBP1-017 retained_intron Homo_sapiens 0 523
ENST00000542629 PPFIBP1-008 protein_coding Homo_sapiens 0 2065
ENST00000619325 PPFIBP1-018 protein_coding Homo_sapiens 5e-33 147

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