C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: FYVE, RhoGEF and PH domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000123989 Fgd2-002 ENSMUSG00000024013 10090 + 17:29360914-29379660 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartLiverLungMuscleOvaryPlacentaENSMUST00000123989
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Liver Lung Muscle Ovary Placenta
ENSMUST00000123989 1.340±0.00 0.462±0.05 0.710±0.12 4.010±1.14 0.931±0.08 0.284±0.00 0.573±0.26 1.837±0.12 0.140±0.00 1.202±0.00 0.196±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089L CIL_00089L_0002 VISTA 17:29133661-29735358
CIL_0002Y4 CIL_0002Y4_0002 CGP 17:29332072-29379660
CIL_0002Y3 CIL_0002Y3_0002 CGP 17:29360914-29496111

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0032321 IEA positive regulation of Rho GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000274963 FGD2-001 protein_coding Homo_sapiens 0 1158
ENST00000373535 FGD2-003 nonsense_mediated_decay Homo_sapiens 0 961
ENST00000375135 FGD1-001 protein_coding Homo_sapiens 0.000000003 69
ENST00000464083 FGD2-006 retained_intron Homo_sapiens 0 1158
ENST00000470273 FGD2-008 retained_intron Homo_sapiens 0 228
ENST00000487920 FGD2-010 retained_intron Homo_sapiens 0 473
ENST00000493635 FGD2-009 retained_intron Homo_sapiens 0 462
ENST00000494343 FGD2-007 retained_intron Homo_sapiens 0 1158

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