C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GTPase activating RANGAP domain-like 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000124000 Garnl3-011 ENSMUSG00000038860 10090 - 2:33054216-33130608 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonKidneyLiverLungOvaryENSMUST00000124000
Transcript ID Adrenal Breast Colon Kidney Liver Lung Ovary
ENSMUST00000124000 4.917±2.21 2.751±0.00 1.134±0.00 0.671±0.00 0.078±0.01 4.963±0.00 3.833±1.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YA CIL_0008YA_0002 VISTA 2:32608279-33209524

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000373386 GARNL3-001 nonsense_mediated_decay Homo_sapiens 0 257
ENST00000373387 GARNL3-003 protein_coding Homo_sapiens 0 257
ENST00000425970 GARNL3-012 protein_coding Homo_sapiens 0 257
ENST00000429629 GARNL3-011 nonsense_mediated_decay Homo_sapiens 0 196
ENST00000435213 GARNL3-201 protein_coding Homo_sapiens 0 257
ENST00000439286 GARNL3-005 protein_coding Homo_sapiens 0 449
ENST00000441134 GARNL3-018 nonsense_mediated_decay Homo_sapiens 0 501
ENST00000444677 GARNL3-016 protein_coding Homo_sapiens 0 449
ENST00000446764 GARNL3-009 protein_coding Homo_sapiens 0 656
ENST00000478702 GARNL3-019 processed_transcript Homo_sapiens 0 257
ENST00000487565 GARNL3-021 processed_transcript Homo_sapiens 0 255
ENST00000498801 GARNL3-020 processed_transcript Homo_sapiens 0 257

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