C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleoporin 35
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000124377 Nup35-002 ENSMUSG00000026999 10090 + 2:80638832-80656004 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungOvaryPlacentaENSMUST00000124377
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Ovary Placenta
ENSMUST00000124377 4.745±0.00 15.992±5.75 12.024±0.00 3.663±0.22 4.562±1.13 4.483±0.04 6.619±5.95 3.616±0.08 10.682±2.12 4.657±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000Q8 CIL_0000Q8_0002 CGP 2:80500512-80632361
CIL_0000Q9 CIL_0000Q9_0002 CGP 2:80617045-80658906
CIL_0000QA CIL_0000QA_0002 CGP 2:80617236-82259879

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295119 NUP35-001 protein_coding Homo_sapiens 0 682
ENST00000374930 NUP35-004 nonsense_mediated_decay Homo_sapiens 0 499
ENST00000409798 NUP35-002 protein_coding Homo_sapiens 0 647
ENST00000422734 RP11-183E9.2-001 processed_pseudogene Homo_sapiens 0 510
ENST00000442895 NUP35-005 protein_coding Homo_sapiens 0 329
ENST00000446612 NUP35-006 protein_coding Homo_sapiens 0 466
ENST00000452137 NUP35-010 nonsense_mediated_decay Homo_sapiens 0 451
ENST00000455063 NUP35-008 protein_coding Homo_sapiens 0 259
ENST00000479162 NUP35-003 retained_intron Homo_sapiens 0 499
ENST00000497330 NUP35-009 processed_transcript Homo_sapiens 0 451

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