C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: golgi to ER traffic protein 4 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000124420 Get4-006 ENSMUSG00000025858 10090 + 5:139266931-139269702 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartLiverLungOvaryTestisENSMUST00000124420
Transcript ID Adipose Bladder Brain Breast Colon Heart Liver Lung Ovary Testis
ENSMUST00000124420 10.152±2.43 16.166±2.07 11.829±1.17 11.887±0.95 14.980±1.06 5.788±0.00 7.278±2.58 15.174±3.39 23.125±0.98 1.944±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00018J CIL_00018J_0002 CGP 5:139200637-139270051
CIL_0008V5 CIL_0008V5_0002 VISTA 5:139236245-139837428
CIL_0008DL CIL_0008DL_0002 VISTA 5:139238772-139840184
CIL_000186 CIL_000186_0002 CGP 5:139252324-139325622

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265857 GET4-001 protein_coding Homo_sapiens 0 270
ENST00000407192 GET4-002 protein_coding Homo_sapiens 0 270
ENST00000457861 SUN1-033 nonsense_mediated_decay Homo_sapiens 0 270

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