C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | PR domain containing 16 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000124771  |
Prdm16-008 |
ENSMUSG00000039410 |
10090 | - |
4:154355277-154636873  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_00099V | CIL_00099V_0002 | VISTA | 4:154093365-154697126 |
| CIL_0007TB | CIL_0007TB_0002 | VISTA | 4:154156294-154757167 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0022008 | IDA | neurogenesis |
| GO:0030512 | IMP | negative regulation of transforming growth factor beta receptor signaling pathway |
| GO:0035019 | IDA | somatic stem cell maintenance |
| GO:0043586 | IMP | tongue development |
| GO:0046332 | IPI | SMAD binding |
| GO:0060021 | IMP | palate development |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000270722
|
PRDM16-001 | protein_coding | Homo_sapiens | 0 | 824 |
|
ENST00000378391
|
PRDM16-003 | protein_coding | Homo_sapiens | 0 | 845 |
|
ENST00000463591
|
PRDM16-004 | protein_coding | Homo_sapiens | 8.40779e-45 | 183 |
|
ENST00000511072
|
PRDM16-007 | protein_coding | Homo_sapiens | 0 | 885 |
|
ENST00000512462
|
PRDM16-009 | processed_transcript | Homo_sapiens | 0 | 283 |
|
ENST00000514189
|
PRDM16-008 | protein_coding | Homo_sapiens | 0 | 817 |
|
ENST00000607632
|
PRDM16-010 | retained_intron | Homo_sapiens | 0 | 597 |
