C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAE1 RNA export 1 homolog (S. pombe)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000124793 Rae1-003 ENSMUSG00000027509 10090 + 2:173006644-173009444 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaENSMUST00000124793
Transcript ID Brain Ovary Placenta
ENSMUST00000124793 14.295±0.00 16.648±0.00 22.173±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YW CIL_0008YW_0002 VISTA 2:172561962-173164167
CIL_0008TD CIL_0008TD_0002 VISTA 2:172564603-173165839
CIL_0008HJ CIL_0008HJ_0002 VISTA 2:172734798-173336840
CIL_0008BA CIL_0008BA_0002 VISTA 2:172748983-173356071
CIL_0002XR CIL_0002XR_0002 CGP 2:172977700-173015739

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000371242 RAE1-002 protein_coding Homo_sapiens 0 392
ENST00000395840 RAE1-003 protein_coding Homo_sapiens 0 392
ENST00000395841 RAE1-001 protein_coding Homo_sapiens 0 392
ENST00000492498 RAE1-008 nonsense_mediated_decay Homo_sapiens 0 392
ENST00000527947 RAE1-010 protein_coding Homo_sapiens 0 392

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