C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil domain containing 171
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000125077 Ccdc171-006 ENSMUSG00000052407 10090 + 4:83525639-83864585 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000125077
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000125077 0.290±0.00 0.460±0.00 0.421±0.00 0.268±0.02 0.088±0.00 0.138±0.03 0.223±0.06 0.116±0.04 0.475±0.38 0.284±0.15 5.497±4.56

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00051U CIL_00051U_0003 CGP 4:83455680-83864670
CIL_0007VI CIL_0007VI_0002 VISTA 4:83494853-84095171

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000380701 CCDC171-001 protein_coding Homo_sapiens 0 2837
ENST00000432954 CCDC171-008 protein_coding Homo_sapiens 0 953
ENST00000449575 CCDC171-003 protein_coding Homo_sapiens 0 1507
ENST00000470191 CCDC171-005 processed_transcript Homo_sapiens 0 793
ENST00000472806 CCDC171-007 processed_transcript Homo_sapiens 8e-16 88
ENST00000486641 CCDC171-004 processed_transcript Homo_sapiens 0 309
ENST00000498725 CCDC171-006 processed_transcript Homo_sapiens 0 401
ENST00000535968 CCDC171-201 protein_coding Homo_sapiens 0 857

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