C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: AT rich interactive domain 4A (RBP1-like)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000125125 Arid4a-003 ENSMUSG00000048118 10090 + 12:71016708-71047339 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonOvaryENSMUST00000125125
Transcript ID Adipose Adrenal Breast Colon Ovary
ENSMUST00000125125 1.619±0.00 1.404±0.41 1.841±0.00 0.862±0.00 0.902±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004LX CIL_0004LX_0002 CGP 12:70974621-71098592
CIL_0001K9 CIL_0001K9_0002 CGP 12:71015990-71123222

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006349 IGI regulation of gene expression by genetic imprinting
GO:0007283 IGI spermatogenesis
GO:0034773 IGI histone H4-K20 trimethylation
GO:0036124 IGI histone H3-K9 trimethylation
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0048821 IMP erythrocyte development
GO:0080182 IMP histone H3-K4 trimethylation
GO:0097368 IGI establishment of Sertoli cell barrier

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000348476 ARID4A-201 protein_coding Homo_sapiens 0 1146
ENST00000355431 ARID4A-001 protein_coding Homo_sapiens 0 1146
ENST00000395168 ARID4A-003 protein_coding Homo_sapiens 0 1146
ENST00000424658 ARID4A-006 protein_coding Homo_sapiens 0 279
ENST00000431317 ARID4A-002 protein_coding Homo_sapiens 0 1216
ENST00000431612 ARID4A-004 nonsense_mediated_decay Homo_sapiens 0 226
ENST00000445108 ARID4A-005 protein_coding Homo_sapiens 0 926

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