C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane protein 39b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000125445 Tmem39b-002 ENSMUSG00000053730 10090 - 4:129676355-129696796 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000125445
Transcript ID Adipose Adrenal Bladder Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000125445 2.056±0.71 1.914±0.70 1.515±0.00 2.126±0.52 2.004±0.33 1.815±0.38 1.106±0.42 1.617±0.22 0.765±0.39 2.367±1.00 2.740±2.11 13.940±7.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AA CIL_0008AA_0002 VISTA 4:129413466-130014337

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000336294 TMEM39B-001 protein_coding Homo_sapiens 0 1683
ENST00000438825 TMEM39B-009 protein_coding Homo_sapiens 0 551
ENST00000441402 TMEM39B-003 nonsense_mediated_decay Homo_sapiens 0 1295
ENST00000466321 TMEM39B-005 processed_transcript Homo_sapiens 0 473
ENST00000468135 TMEM39B-004 processed_transcript Homo_sapiens 0 2357
ENST00000472503 TMEM39B-006 processed_transcript Homo_sapiens 0 813
ENST00000476968 TMEM39B-008 processed_transcript Homo_sapiens 0 1114
ENST00000487305 TMEM39B-002 processed_transcript Homo_sapiens 0 1683
ENST00000498613 TMEM39B-007 processed_transcript Homo_sapiens 0 1064

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