C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: programmed cell death 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000125709 Pdcd2-005 ENSMUSG00000014771 10090 - 17:15521593-15522143 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaENSMUST00000125709
Transcript ID Placenta
ENSMUST00000125709 23.053±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DG CIL_0008DG_0002 VISTA 17:15140120-15741360
CIL_00018G CIL_00018G_0002 CGP 17:15475721-15528379
CIL_00018F CIL_00018F_0002 CGP 17:15499888-15528379

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000167218 PDCD2-009 nonsense_mediated_decay Homo_sapiens 0 348
ENST00000392090 PDCD2-007 protein_coding Homo_sapiens 0 348
ENST00000539212 PDCD2-011 nonsense_mediated_decay Homo_sapiens 3e-24 115
ENST00000541970 PDCD2-001 protein_coding Homo_sapiens 0 350
ENST00000542896 PDCD2-006 protein_coding Homo_sapiens 4e-37 159
ENST00000543284 PDCD2-008 retained_intron Homo_sapiens 0 361
ENST00000544866 PDCD2-012 nonsense_mediated_decay Homo_sapiens 3e-37 159
ENST00000545869 PDCD2-010 nonsense_mediated_decay Homo_sapiens 0 294

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