C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: MRV integration site 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000125758 Mrvi1-002 ENSMUSG00000005611 10090 - 7:110868272-110946187 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverMuscleOvaryPlacentaENSMUST00000125758
Transcript ID Liver Muscle Ovary Placenta
ENSMUST00000125758 0.122±0.00 0.370±0.14 1.214±0.00 0.157±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004IK CIL_0004IK_0002 CGP 7:110850607-110982461
CIL_0004JB CIL_0004JB_0002 CGP 7:110868266-111056377

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0016021 IEA integral component of membrane
GO:0016529 IEA sarcoplasmic reticulum
GO:0019934 IMP cGMP-mediated signaling
GO:0045986 IMP negative regulation of smooth muscle contraction
GO:0060087 IMP relaxation of vascular smooth muscle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000114427 mrvi1-201 protein_coding Danio_rerio 0 217
ENSDART00000154634 mrvi1-001 protein_coding Danio_rerio 0 217
ENST00000423302 MRVI1-001 protein_coding Homo_sapiens 0 2543
ENST00000424001 MRVI1-201 protein_coding Homo_sapiens 0 2353
ENST00000526414 MRVI1-003 nonsense_mediated_decay Homo_sapiens 0 710
ENST00000527509 MRVI1-014 protein_coding Homo_sapiens 0 2401
ENST00000529448 MRVI1-004 nonsense_mediated_decay Homo_sapiens 0 1923
ENST00000529471 MRVI1-012 retained_intron Homo_sapiens 4e-34 148
ENST00000529547 MRVI1-008 protein_coding Homo_sapiens 0 230
ENST00000531107 MRVI1-002 protein_coding Homo_sapiens 0 2675
ENST00000531786 MRVI1-006 processed_transcript Homo_sapiens 2.94273e-44 182
ENST00000532037 MRVI1-011 processed_transcript Homo_sapiens 0 263
ENST00000533631 MRVI1-010 nonsense_mediated_decay Homo_sapiens 0 377
ENST00000534266 MRVI1-005 protein_coding Homo_sapiens 0 1923
ENST00000541483 MRVI1-013 protein_coding Homo_sapiens 0 1437
ENST00000547195 MRVI1-202 protein_coding Homo_sapiens 0 1936
ENST00000558540 MRVI1-015 protein_coding Homo_sapiens 0 2353

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