C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vitamin D receptor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000126568 Vdr-002 ENSMUSG00000022479 10090 - 15:97876776-97896813 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENSMUST00000126568
Transcript ID Brain
ENSMUST00000126568 0.051±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003DI CIL_0003DI_0003 CGP 15:97792664-97910630
CIL_0005YK CIL_0005YK_0002 CGP 15:97854425-97970286

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IMP skeletal system development
GO:0003677 ISO DNA binding
GO:0004879 IDA ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0006816 IMP calcium ion transport
GO:0006874 IMP cellular calcium ion homeostasis
GO:0007275 IMP multicellular organismal development
GO:0007595 IMP lactation
GO:0008270 IEA zinc ion binding
GO:0008434 IEA calcitriol receptor activity
GO:0009887 IMP organ morphogenesis
GO:0030522 IDA intracellular receptor signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0045892 ISO negative regulation of transcription, DNA-templated
GO:0050892 IMP intestinal absorption
GO:0060058 IMP positive regulation of apoptotic process involved in mammary gland involution
GO:0060745 IMP mammary gland branching involved in pregnancy
GO:0070561 IEA vitamin D receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000229022 VDR-201 protein_coding Homo_sapiens 0 350
ENST00000395324 VDR-001 protein_coding Homo_sapiens 0 350
ENST00000548664 VDR-006 protein_coding Homo_sapiens 0 350
ENST00000549336 VDR-004 protein_coding Homo_sapiens 0 350
ENST00000550314 VDR-008 protein_coding Homo_sapiens 0 350
ENST00000550325 VDR-002 protein_coding Homo_sapiens 0 350

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