C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000126610 Rpl12-001 ENSMUSG00000038900 10090 + 2:32961559-32964496 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryTestisENSMUST00000126610
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENSMUST00000126610 63.327±0.00 169.951±14.60 156.608±11.99 162.351±57.52 28.341±11.48 65.708±8.63 126.108±99.16 113.426±0.00 31.760±10.83 123.451±47.42 42.016±7.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YA CIL_0008YA_0002 VISTA 2:32608279-33209524
CIL_0002XQ CIL_0002XQ_0002 CGP 2:32925216-32964496

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0003735 IEA structural constituent of ribosome
GO:0005840 IEA ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000141676 rpl12-002 processed_transcript Danio_rerio 0.0000000008 69
ENSDART00000135459 rpl12-003 retained_intron Danio_rerio 0.0000000008 69
ENSDART00000008807 rpl12-001 protein_coding Danio_rerio 0.0000000008 69
ENST00000310055 RP11-344H11.4-001 unprocessed_pseudogene Homo_sapiens 0 520
ENST00000361436 RPL12-001 protein_coding Homo_sapiens 0 787
ENST00000374520 RPL12P1-001 processed_pseudogene Homo_sapiens 0 582
ENST00000406185 RP11-480N24.3-001 processed_pseudogene Homo_sapiens 1e-37 158
ENST00000424565 RPL12P2-001 processed_pseudogene Homo_sapiens 0 547
ENST00000424633 RPL12L3-001 processed_pseudogene Homo_sapiens 0 601
ENST00000425565 RPL12P29-001 processed_pseudogene Homo_sapiens 0 342
ENST00000428087 RP11-248I9.2-001 processed_pseudogene Homo_sapiens 0 207
ENST00000431782 RP11-169K16.6-001 processed_pseudogene Homo_sapiens 0 516
ENST00000432393 AC093698.2-001 processed_pseudogene Homo_sapiens 0 532
ENST00000432629 RPL12P4-001 processed_pseudogene Homo_sapiens 0 630
ENST00000439896 RPL12P1-001 processed_pseudogene Homo_sapiens 0 577
ENST00000448702 RPL12P1-001 processed_pseudogene Homo_sapiens 0 582
ENST00000460355 NBEAL1-003 retained_intron Homo_sapiens 0 782
ENST00000467671 KIFC1-003 processed_transcript Homo_sapiens 0 484
ENST00000471280 RPL12P38-001 transcribed_processed_pseudogene Homo_sapiens 0 569
ENST00000472214 CTB-46B19.1-001 processed_pseudogene Homo_sapiens 0 455
ENST00000477007 RP11-106M3.1-001 processed_pseudogene Homo_sapiens 0 575
ENST00000481802 CTC-250I14.1-001 processed_pseudogene Homo_sapiens 0 532
ENST00000482081 RPL12P8-001 processed_pseudogene Homo_sapiens 0 680
ENST00000484010 RP11-428G5.2-001 processed_pseudogene Homo_sapiens 0 508
ENST00000485633 RPL12P33-001 processed_pseudogene Homo_sapiens 0 532
ENST00000486695 KIFC1-003 retained_intron Homo_sapiens 0 484
ENST00000486874 RPL12P37-001 processed_pseudogene Homo_sapiens 0 492
ENST00000492999 KIFC1-003 processed_transcript Homo_sapiens 0 479
ENST00000495231 RP11-434O22.1-001 processed_pseudogene Homo_sapiens 0 566
ENST00000497322 RPL12-002 processed_transcript Homo_sapiens 0 198
ENST00000497825 RPL12-003 processed_transcript Homo_sapiens 0 198
ENST00000536368 RPL12-201 protein_coding Homo_sapiens 0 237
ENST00000588627 RPL12P38-002 processed_transcript Homo_sapiens 0 719
ENST00000603116 RP4-741O10.1-001 processed_pseudogene Homo_sapiens 4e-32 139

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