C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000126684 Sema6a-008 ENSMUSG00000019647 10090 - 18:47291894-47333326 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000126684
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000126684 5.919±0.00 3.184±0.00 15.731±4.78 0.166±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004L9 CIL_0004L9_0002 CGP 18:46958862-47368870

Gene Ontology

GO IDEvidence TypeGO Description
GO:0007166 IDA cell surface receptor signaling pathway
GO:0030215 IPI semaphorin receptor binding
GO:0051642 IMP centrosome localization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000257414 SEMA6A-002 protein_coding Homo_sapiens 0 905
ENST00000343348 SEMA6A-001 protein_coding Homo_sapiens 0 905
ENST00000502996 SEMA6A-011 processed_transcript Homo_sapiens 0.00001 55
ENST00000503962 SEMA6A-010 processed_transcript Homo_sapiens 0 706
ENST00000509665 SEMA6A-009 protein_coding Homo_sapiens 0 549
ENST00000510263 SEMA6A-003 protein_coding Homo_sapiens 0 904
ENST00000515009 SEMA6A-008 protein_coding Homo_sapiens 0 758

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