C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: integrin alpha 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000126787 Itga6-005 ENSMUSG00000027111 10090 + 2:71849029-71858416 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000126787
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000126787 26.890±7.17 15.734±2.50 9.280±4.61 5.223±3.22 15.015±3.97 15.618±4.87 10.646±1.25 27.029±3.63 2.363±1.13 26.863±3.43 2.053±0.39 11.949±4.80 13.102±2.81 1.666±0.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008C9 CIL_0008C9_0002 VISTA 2:71216484-71818219
CIL_0009AY CIL_0009AY_0002 VISTA 2:71227336-71828847
CIL_0008AZ CIL_0008AZ_0002 VISTA 2:71235378-71836557
CIL_0008B0 CIL_0008B0_0002 VISTA 2:71237156-71838581
CIL_0003IK CIL_0003IK_0003 CGP 2:71543408-71858416
CIL_0004K8 CIL_0004K8_0002 CGP 2:71745616-71903858

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264107 ITGA6-001 protein_coding Homo_sapiens 0 422
ENST00000409080 ITGA6-004 protein_coding Homo_sapiens 0 577
ENST00000409532 ITGA6-003 protein_coding Homo_sapiens 0 407
ENST00000416789 ITGA6-006 protein_coding Homo_sapiens 0 368
ENST00000442250 ITGA6-010 protein_coding Homo_sapiens 0 368
ENST00000458358 ITGA6-011 protein_coding Homo_sapiens 0 368
ENST00000475302 ITGA6-009 retained_intron Homo_sapiens 6.99949e-42 174

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