C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: secernin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000126874 Scrn2-002 ENSMUSG00000020877 10090 + 11:97030001-97033950 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonHeartLiverLungOvaryPlacentaTestisENSMUST00000126874
Transcript ID Bladder Brain Colon Heart Liver Lung Ovary Placenta Testis
ENSMUST00000126874 0.817±0.15 0.660±0.16 1.455±0.44 0.514±0.00 1.049±0.20 1.482±0.65 4.879±1.43 0.662±0.06 1.032±0.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097B CIL_00097B_0002 VISTA 11:96441475-97042608
CIL_0007WA CIL_0007WA_0002 VISTA 11:96526222-97127190
CIL_0007RQ CIL_0007RQ_0002 VISTA 11:96583318-97187851

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000290216 SCRN2-001 protein_coding Homo_sapiens 0 872
ENST00000407215 SCRN2-002 protein_coding Homo_sapiens 0 872
ENST00000578323 SCRN2-013 protein_coding Homo_sapiens 0 599
ENST00000579856 SCRN2-008 nonsense_mediated_decay Homo_sapiens 0 405
ENST00000581645 SCRN2-003 nonsense_mediated_decay Homo_sapiens 0 859
ENST00000582459 SCRN2-004 nonsense_mediated_decay Homo_sapiens 0 483
ENST00000582656 SCRN2-012 retained_intron Homo_sapiens 0 239
ENST00000583090 SCRN2-010 nonsense_mediated_decay Homo_sapiens 0 244
ENST00000584123 SCRN2-006 protein_coding Homo_sapiens 0 819
ENST00000584567 SCRN2-011 protein_coding Homo_sapiens 0 344

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