C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tRNA methyltransferase 10B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000126972 Trmt10b-003 ENSMUSG00000035601 10090 + 4:45300434-45315142 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverLungMuscleOvaryPlacentaENSMUST00000126972
Transcript ID Liver Lung Muscle Ovary Placenta
ENSMUST00000126972 0.405±0.00 0.913±0.00 1.003±0.29 2.416±1.94 4.636±1.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006TI CIL_0006TI_0002 CGP 4:45184875-45316131
CIL_00081A CIL_00081A_0002 VISTA 4:45205842-45807105
CIL_0006TH CIL_0006TH_0002 CGP 4:45297127-45342732

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000297994 TRMT10B-001 protein_coding Homo_sapiens 0 706
ENST00000377753 TRMT10B-201 protein_coding Homo_sapiens 0 431
ENST00000377754 TRMT10B-002 protein_coding Homo_sapiens 0 749
ENST00000488673 TRMT10B-003 nonsense_mediated_decay Homo_sapiens 0 562
ENST00000509577 TRMT10B-008 retained_intron Homo_sapiens 3e-31 139
ENST00000519377 RP11-790J24.2-001 processed_pseudogene Homo_sapiens 0 331
ENST00000537016 TRMT10B-007 nonsense_mediated_decay Homo_sapiens 0 285
ENST00000537911 TRMT10B-202 protein_coding Homo_sapiens 0 285
ENST00000538370 TRMT10B-004 nonsense_mediated_decay Homo_sapiens 1.4013e-45 187
ENST00000540616 TRMT10B-005 nonsense_mediated_decay Homo_sapiens 1e-33 147

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