C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000127375 Snx11-003 ENSMUSG00000020876 10090 - 11:96769891-96777492 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaENSMUST00000127375
Transcript ID Placenta
ENSMUST00000127375 3.619±0.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097B CIL_00097B_0002 VISTA 11:96441475-97042608
CIL_0007WA CIL_0007WA_0002 VISTA 11:96526222-97127190
CIL_0007RQ CIL_0007RQ_0002 VISTA 11:96583318-97187851

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005768 IBA endosome
GO:0006886 IBA intracellular protein transport
GO:0016050 IBA vesicle organization
GO:0035091 IBA phosphatidylinositol binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000393405 SNX11-001 protein_coding Homo_sapiens 0 741
ENST00000581705 SNX11-007 nonsense_mediated_decay Homo_sapiens 0 263
ENST00000584335 SNX11-010 protein_coding Homo_sapiens 0 741

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