C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: opsin 1 (cone pigments), medium-wave-sensitive (color blindness, deutan)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000127445 Opn1mw-006 ENSMUSG00000031394 10090 + X:74138421-74150756 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastMuscleOvaryPlacentaENSMUST00000127445
Transcript ID Breast Muscle Ovary Placenta
ENSMUST00000127445 0.321±0.16 0.201±0.10 0.257±0.00 0.236±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007GC CIL_0007GC_0003 CGP X:74013914-74135363
CIL_0001LD CIL_0001LD_0002 CGP X:74026592-74150760
CIL_00032W CIL_00032W_0002 CGP X:74127464-74167838

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001750 IDA photoreceptor outer segment
GO:0004930 IEA G-protein coupled receptor activity
GO:0005515 IPI protein binding
GO:0007186 IEA G-protein coupled receptor signaling pathway
GO:0007601 IEA visual perception
GO:0007602 IEA phototransduction
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000369929 OPN1MW2-001 protein_coding Homo_sapiens 0 514
ENST00000369951 OPN1LW-001 protein_coding Homo_sapiens 0 503
ENST00000430419 OPN1MW2-002 protein_coding Homo_sapiens 0 645
ENST00000442922 OPN1LW-002 protein_coding Homo_sapiens 0 638
ENST00000463296 OPN1LW-003 processed_transcript Homo_sapiens 0 230
ENST00000488220 OPN1MW2-003 processed_transcript Homo_sapiens 0 230
ENST00000595290 OPN1MW-001 protein_coding Homo_sapiens 0 514
ENST00000595330 OPN1MW-003 processed_transcript Homo_sapiens 0 230
ENST00000596998 OPN1MW-002 protein_coding Homo_sapiens 0 641
ENST00000599405 OPN1MW-001 protein_coding Homo_sapiens 0 514

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