C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: COP9 (constitutive photomorphogenic) homolog, subunit 6 (Arabidopsis thaliana)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000127881 Cops6-004 ENSMUSG00000019494 10090 + 5:138161109-138162384 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonKidneyLiverENSMUST00000127881
Transcript ID Colon Kidney Liver
ENSMUST00000127881 80.977±0.00 72.479±0.00 69.885±12.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QI CIL_0008QI_0002 VISTA 5:137705744-138314172
CIL_0002GB CIL_0002GB_0002 CGP 5:138139702-138164646
CIL_0003E2 CIL_0003E2_0002 CGP 5:138161071-138172422

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000303904 COPS6-001 protein_coding Homo_sapiens 0 460
ENST00000418625 COPS6-004 protein_coding Homo_sapiens 0 475
ENST00000419210 COPS6-007 protein_coding Homo_sapiens 0 228
ENST00000426712 COPS6-005 nonsense_mediated_decay Homo_sapiens 0 200
ENST00000465027 COPS6-006 retained_intron Homo_sapiens 0 248
ENST00000468499 COPS6-003 retained_intron Homo_sapiens 0 460
ENST00000472107 COPS6-002 retained_intron Homo_sapiens 0 490
ENST00000474823 COPS6-010 retained_intron Homo_sapiens 8.00141e-43 178
ENST00000483891 COPS6-008 retained_intron Homo_sapiens 1.96182e-44 183
ENST00000496358 COPS6-009 retained_intron Homo_sapiens 0 455

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