C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 114
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000127939 Rnf114-003 ENSMUSG00000006418 10090 + 2:167503446-167516164 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000127939
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000127939 23.809±3.83 34.251±2.95 20.513±2.84 18.747±5.03 36.696±7.89 26.884±3.54 21.081±8.37 27.449±2.68 17.659±6.67 38.464±3.64 8.144±1.76 26.975±6.08 13.293±5.68 11.175±2.80

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008I4 CIL_0008I4_0002 VISTA 2:167024358-167627099
CIL_00087E CIL_00087E_0002 VISTA 2:167269881-167871243
CIL_0001VJ CIL_0001VJ_0002 CGP 2:167421712-167492887
CIL_00027D CIL_00027D_0002 CGP 2:167481133-167516173
CIL_0006FM CIL_0006FM_0002 CGP 2:167492645-167542814

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000244061 RNF114-001 protein_coding Homo_sapiens 0 496
ENST00000622920 RNF114-004 protein_coding Homo_sapiens 0 255
ENST00000622999 RNF114-002 nonsense_mediated_decay Homo_sapiens 0 496
ENST00000623528 RNF114-006 nonsense_mediated_decay Homo_sapiens 0 575
ENST00000623732 RNF114-008 nonsense_mediated_decay Homo_sapiens 3.00004e-41 172
ENST00000624666 RNF114-005 retained_intron Homo_sapiens 0 475
ENST00000625177 RNF114-009 protein_coding Homo_sapiens 0 254

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