C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: repulsive guidance molecule family member A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000128471 Rgma-004 ENSMUSG00000070509 10090 + 7:73391160-73409451 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverENSMUST00000128471
Transcript ID Liver
ENSMUST00000128471 0.195±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006GY CIL_0006GY_0002 CGP 7:73375520-73541746

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001843 IMP neural tube closure
GO:0001934 ISO positive regulation of protein phosphorylation
GO:0005515 IPI protein binding
GO:0009986 IDA cell surface
GO:0015026 IGI coreceptor activity
GO:0030509 IGI BMP signaling pathway
GO:0030510 IDA regulation of BMP signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000329082 RGMA-001 protein_coding Homo_sapiens 0 497
ENST00000425933 RGMA-201 protein_coding Homo_sapiens 0 496
ENST00000542321 RGMA-007 protein_coding Homo_sapiens 0 497
ENST00000543599 RGMA-202 protein_coding Homo_sapiens 0 497
ENST00000554387 RGMA-005 nonsense_mediated_decay Homo_sapiens 0 287
ENST00000555584 RGMA-012 processed_transcript Homo_sapiens 0 289
ENST00000555598 RGMA-009 protein_coding Homo_sapiens 0 449
ENST00000556658 RGMA-006 protein_coding Homo_sapiens 0 291
ENST00000556950 RGMA-008 protein_coding Homo_sapiens 4e-27 124
ENST00000557301 RGMA-004 protein_coding Homo_sapiens 0 497
ENST00000557420 RGMA-010 protein_coding Homo_sapiens 0 213
ENST00000557608 RGMA-011 retained_intron Homo_sapiens 0 211

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