C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: phosphatase and actin regulator 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000128646 Phactr1-001 ENSMUSG00000054728 10090 + 13:42680623-43138524 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverLungENSMUST00000128646
Transcript ID Brain Liver Lung
ENSMUST00000128646 10.304±9.44 0.095±0.00 2.415±0.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003IC CIL_0003IC_0002 CGP 13:42301270-43138526
CIL_0001BV CIL_0001BV_0003 CGP 13:42680623-43171501

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IDA actin binding
GO:0004864 IEA protein phosphatase inhibitor activity
GO:0005634 IDA nucleus
GO:0005829 IDA cytosol
GO:0030054 IEA cell junction
GO:0031032 IMP actomyosin structure organization
GO:0031532 IMP actin cytoskeleton reorganization
GO:0043086 IEA negative regulation of catalytic activity
GO:0043149 IMP stress fiber assembly
GO:0045202 IEA synapse

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000332995 PHACTR1-005 protein_coding Homo_sapiens 0 2383
ENST00000379329 PHACTR1-004 protein_coding Homo_sapiens 0 351
ENST00000379335 PHACTR1-003 protein_coding Homo_sapiens 0 595
ENST00000379348 PHACTR1-010 protein_coding Homo_sapiens 0 394
ENST00000379350 PHACTR1-001 protein_coding Homo_sapiens 0 1886
ENST00000406205 PHACTR1-006 protein_coding Homo_sapiens 0 736
ENST00000415087 PHACTR1-201 protein_coding Homo_sapiens 0 1993
ENST00000489548 PHACTR1-009 processed_transcript Homo_sapiens 0 405
ENST00000502313 HMGB1P21-001 processed_pseudogene Homo_sapiens 0.0004 53

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