C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: KH domain containing, RNA binding, signal transduction associated 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000129342 Khdrbs1-001 ENSMUSG00000028790 10090 - 4:129703164-129742297 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000129342
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000129342 5.245±2.64 2.793±0.19 13.798±6.72 4.475±1.17 5.658±2.02 1.931±0.25 3.028±0.46 2.002±1.40 6.771±1.34 1.234±0.10 11.752±7.88 17.557±15.59 6.846±2.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AA CIL_0008AA_0002 VISTA 4:129413466-130014337

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 ISS RNA binding
GO:0005070 IPI SH3/SH2 adaptor activity
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007049 IEA cell cycle
GO:0007166 IDA cell surface receptor signaling pathway
GO:0008143 ISO poly(A) binding
GO:0008266 ISO poly(U) RNA binding
GO:0009967 IPI positive regulation of signal transduction
GO:0016020 ISS membrane
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045948 ISS positive regulation of translational initiation
GO:0046831 IDA regulation of RNA export from nucleus
GO:0046833 ISS positive regulation of RNA export from nucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000281156 KHDRBS2-001 protein_coding Homo_sapiens 2.00386e-43 182
ENST00000307714 KHDRBS1-002 processed_transcript Homo_sapiens 0 1502
ENST00000327300 KHDRBS1-001 protein_coding Homo_sapiens 0 2060
ENST00000484270 KHDRBS1-005 processed_transcript Homo_sapiens 0 1797
ENST00000492989 KHDRBS1-003 protein_coding Homo_sapiens 0 963

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