C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: von Willebrand factor C domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000129670 Vwc2-002 ENSMUSG00000050830 10090 + 11:11114744-11268931 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastKidneyLiverLungOvaryTestisENSMUST00000129670
Transcript ID Adipose Brain Breast Kidney Liver Lung Ovary Testis
ENSMUST00000129670 0.025±0.00 0.492±0.00 0.021±0.00 0.024±0.01 0.006±0.00 0.036±0.00 0.013±0.00 0.058±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000S3 CIL_0000S3_0002 CGP 11:9191942-11268931
CIL_0006LI CIL_0006LI_0002 CGP 11:11114223-11462408

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005604 IDA basement membrane
GO:0005614 IDA interstitial matrix
GO:0005615 IDA extracellular space
GO:0010811 IDA positive regulation of cell-substrate adhesion
GO:0030054 IEA cell junction
GO:0030514 IDA negative regulation of BMP signaling pathway
GO:0031012 IDA extracellular matrix
GO:0032281 IDA alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex
GO:0045202 IEA synapse
GO:0045666 IDA positive regulation of neuron differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000340652 VWC2-001 protein_coding Homo_sapiens 0 1548

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