C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S19
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000129847 Rps19-004 ENSMUSG00000040952 10090 + 7:24884633-24889806 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastLiverOvaryPlacentaTestisENSMUST00000129847
Transcript ID Brain Breast Liver Ovary Placenta Testis
ENSMUST00000129847 31.998±0.00 22.395±0.00 18.018±2.71 103.805±18.32 106.366±13.85 8.807±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003WP CIL_0003WP_0002 CGP 7:24870057-24889806
CIL_0003W3 CIL_0003W3_0002 CGP 7:24884371-24902197

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005840 IEA ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000221975 RPS19-005 protein_coding Homo_sapiens 0 444
ENST00000405355 RP11-346C16.4-001 processed_pseudogene Homo_sapiens 0 298
ENST00000415286 RPS19P1-001 processed_pseudogene Homo_sapiens 0 344
ENST00000455650 RP11-445N18.3-001 processed_pseudogene Homo_sapiens 0 261
ENST00000457967 RP11-389O22.4-001 processed_pseudogene Homo_sapiens 0 246
ENST00000477321 RP11-289K10.1-001 processed_pseudogene Homo_sapiens 0 303
ENST00000480487 RPS19P3-001 processed_pseudogene Homo_sapiens 0 327
ENST00000593863 RPS19-006 protein_coding Homo_sapiens 0 444
ENST00000598261 RPS19-007 protein_coding Homo_sapiens 0 267
ENST00000598399 RPS19-008 nonsense_mediated_decay Homo_sapiens 0 257
ENST00000598466 RPS19-004 retained_intron Homo_sapiens 0 329
ENST00000598742 RPS19-001 protein_coding Homo_sapiens 0 444
ENST00000600467 RPS19-002 protein_coding Homo_sapiens 0 267
ENST00000601492 RPS19-003 protein_coding Homo_sapiens 0 329

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