C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin protein ligase E3B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000130169 Ube3b-002 ENSMUSG00000029577 10090 + 5:114380826-114421168 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainLiverMuscleOvaryPlacentaTestisENSMUST00000130169
Transcript ID Adrenal Bladder Brain Liver Muscle Ovary Placenta Testis
ENSMUST00000130169 13.490±0.00 4.455±0.00 5.982±0.06 2.891±1.96 7.311±2.19 4.545±0.00 3.410±0.89 5.129±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001GM CIL_0001GM_0003 CGP 5:114363567-114421168
CIL_000401 CIL_000401_0002 CGP 5:114380628-114444059

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 IBA ubiquitin-protein transferase activity
GO:0005634 IBA nucleus
GO:0005737 IBA cytoplasm
GO:0016874 IEA ligase activity
GO:0042787 IBA protein ubiquitination involved in ubiquitin-dependent protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000088968 ube3b-001 protein_coding Danio_rerio 0 1280
ENST00000342494 UBE3B-001 protein_coding Homo_sapiens 0 2808
ENST00000434735 UBE3B-002 protein_coding Homo_sapiens 0 2808
ENST00000449510 UBE3B-008 nonsense_mediated_decay Homo_sapiens 0 1441
ENST00000535900 UBE3B-014 processed_transcript Homo_sapiens 0 204
ENST00000538070 UBE3B-010 retained_intron Homo_sapiens 0 1127
ENST00000539584 UBE3B-012 retained_intron Homo_sapiens 0 983
ENST00000539599 UBE3B-006 protein_coding Homo_sapiens 0 2093

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