C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen and calcium binding EGF domains 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000130300 Ccbe1-001 ENSMUSG00000046318 10090 - 18:66060967-66291838 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverLungMuscleTestisENSMUST00000130300
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Lung Muscle Testis
ENSMUST00000130300 0.184±0.00 9.779±0.00 0.666±0.39 0.603±0.10 0.800±0.00 0.510±0.15 1.467±0.27 0.077±0.00 2.666±0.81

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001P5 CIL_0001P5_0002 CGP 18:65980754-66302739
CIL_0007FI CIL_0007FI_0002 CGP 18:66045302-66465550

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001946 ISS lymphangiogenesis
GO:0002020 IEA protease binding
GO:0002040 ISS sprouting angiogenesis
GO:0005509 IEA calcium ion binding
GO:0005518 ISO collagen binding
GO:0005581 IEA collagen trimer
GO:0005615 IEA extracellular space
GO:0010575 IEA positive regulation vascular endothelial growth factor production
GO:0010595 IMP positive regulation of endothelial cell migration
GO:0010954 IEA positive regulation of protein processing
GO:0031012 ISO extracellular matrix
GO:0045766 IDA positive regulation of angiogenesis
GO:0048845 ISS venous blood vessel morphogenesis
GO:1900748 IEA positive regulation of vascular endothelial growth factor signaling pathway
GO:1901492 IDA positive regulation of lymphangiogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000398179 CCBE1-201 protein_coding Homo_sapiens 0 1134
ENST00000439986 CCBE1-001 protein_coding Homo_sapiens 0 1410
ENST00000589116 CCBE1-002 retained_intron Homo_sapiens 0 765
ENST00000589419 CCBE1-004 protein_coding Homo_sapiens 0 555

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